Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs10514772 chr2:30825793 G/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs10518059 chr4:70303586 G/A 5.26E-13 118 41.77 35.7 6 KM Plot
THYM rs10518168 chr4:78157899 C/T 7.44E-6 119 38.83 46.23 31.72 KM Plot
THYM rs10600977 chr9:98513205 CTG/C 4.98E-5 118 38.33 51.38 32.7 KM Plot
THYM rs1061835 chr9:97162778 T/G 8.1E-5 119 41.77 42 17.03 KM Plot
THYM rs10624638 chr2:30797553 G/GTC 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs10635270 chr15:42339646 G/GACTC 0.000141 118 41.77 46.15 28.43 KM Plot
THYM rs10674483 chr11:125568573 A/ACT 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs10684388 chr6:3265518 A/ATATT 0 119 4.13 42.25 38.58 KM Plot
THYM rs10735042 chr12:5097501 A/G 1.63E-6 116 11.58 35.13 46.27 KM Plot
THYM rs1074066 chr2:30826278 C/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs1075733 chr19:29324460 C/T 5.15E-11 119 46.6 40.67 12.63 KM Plot
THYM rs10799399 chr1:227373371 C/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs10834554 chr11:3610307 G/C 0.0003 118 40.67 51.53 16 KM Plot
THYM rs10834561 chr11:3611769 C/G 0.000276 119 16 51.53 39.75 KM Plot